USDA

Update of USDA National Nutrient Database for Standard Reference Released

USDA Agricultural Research Service - Fri, 10/10/2014 - 07:40
Latest Update of USDA National Nutrient Database for Standard Reference Released / October 10, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 A woman using a laptop to access the nutrient database. Link to photo information
ARS has released the 2014 update to its USDA National Nutrient Database. Click the image for more information about it.


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Latest Update of USDA National Nutrient Database for Standard Reference Released

By Rosalie Marion Bliss
October 10, 2014

The 2014 update of the U.S. Department of Agriculture (USDA) National Nutrient Database for Standard Reference, Release 27, has been launched. Containing data for more than 8,600 food items, the database is compiled by scientists at USDA's Agricultural Research Service (ARS) Beltsville Human Nutrition Research Center (BHNRC) in Beltsville, Maryland.

Each year, new food-nutrient profiles are added to the database, and existing nutrient profiles are updated using data generated by USDA-ARS through its National Food and Nutrient Analysis Program and collaborations with the food industry and with others.

The Internet "dashboard" that users see after launching the online version of the database has been reorganized so that users can more easily select and view food-nutrient profiles from individual food groups. Another new consumer-oriented upgrade allows users to look up the amount of a specific nutrient within any one of the database's food items. For example, a person whose doctor recommends more dietary fiber might sort all foods by fiber content from highest to lowest. A consumer who wants to increase calcium intake might sort by calcium content of foods.

To use the new feature, click on "Start your search here" at ndb.nal.usda.gov. Next, select "Nutrients List" from the menu options at the top. Click "Select nutrient" in the "First Nutrient" box to see a drop-down list of more than 100 nutrients such as protein, calcium, carbohydrate, cholesterol, fats, caffeine and vitamin K. A second and third nutrient also can be selected. Then choose to search either "All Foods" or the "Abridged List," which includes about 1,000 commonly eaten foods in the United States. Next, for the "Food Groups" selection, click on "All Food Groups" or one of the 25 food groups available. Decide whether to sort by "Food Name" or "Nutrient Content" in the next box. Then choose between "Household" and "100 grams" in the "Measure by" box and hit "Go."

The database is managed by scientists at the ARS Nutrient Data Laboratory. ARS is USDA's chief intramural scientific research agency.

Read more about the USDA-ARS national nutrient data in the October 2014 issue of Agricultural Research magazine.

Categories: USDA

Protecting the Flavor of Mandarin Oranges

USDA Agricultural Research Service - Wed, 10/08/2014 - 07:17
Protecting the Flavor of Mandarin Oranges / October 8, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Sliced mandarin oranges next to a photo of vials of mandarin orange juice.
An ARS scientist and his colleagues are studying how storage temperatures and times affect the flavor of mandarin oranges.


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Protecting the Flavor of Mandarin Oranges

By Marcia Wood
October 8, 2014

Sweet, juicy mandarin oranges get their pleasing flavor from a complex blend of natural chemicals. In ongoing experiments, U.S. Department of Agriculture (USDA) scientist David M. Obenland and co-investigator Mary Lu Arpaia, with the University of California Riverside, are taking a close look at how storage temperatures and the amount of time in storage at packinghouses affect the flavor of these small, colorful oranges.

Their research is among the most extensive of its kind for this specialty fruit. To date, their tests have involved working with the peeled fruit or juice of more than 19,000 fresh mandarin oranges that were harvested from at least a half dozen research and commercial orchards in California. That state produces the bulk of the nation's harvest of tangerines, clementines, and other kinds of mandarins.

Most of that fruit probably spends at least some time in cold storage, followed by a period of warmer storage, according to Obenland, who is with Agricultural Research Service’s (ARS) San Joaquin Valley Agricultural Sciences Center in Parlier, California. ARS is USDA’s chief intramural scientific research agency.

His research with Arpaia addresses each phase separately, an approach that apparently has made the studies unique among most other published mandarin flavor investigations.

One of their experiments has shown that cold storage temperatures influence the flavor of the classic W. Murcott Afourer oranges, often referred to simply as W. Murcott mandarins, but not the flavor of the Owari variety.

In other work, the researchers found that significant changes in several flavor-associated chemicals occurred soon after W. Murcott mandarins were brought out of cold storage. In brief, significant increases in three chemicals (ethyl acetate, ethyl propanoate and ethyl 2-methylpropanoate) that belong to a class known as ethyl esters occurred within the first 24 hours after the mandarins were moved from 41-degree Fahrenheit storage into 68-degree Fahrenheit storage. Significant increases in a fourth ethyl ester, ethyl 2-methylbutanoate, took place a day later.

All four ethyl esters are thought to contribute to a sweet, fruity aroma, which may have a role in what is perceived as flavor. However, it has been suggested that high levels of these four compounds may contribute to off-flavor. The team's ongoing studies might help pinpoint optimal levels of the four chemicals.

Read more about this research in the October 2014 issue of Agricultural Research magazine.

Obenland, Arpaia, ARS statistician Bruce Mackey at Albany, California, and Arpaia’s University of California colleagues Sue Collin and James Sievert published these findings in the journal Postharvest Biology and Technology in 2011 and 2013.

Financial support for the research has come from the California Citrus Research Board, a grant from the U.S. Israel Binational Research and Development Fund, and ARS.

Categories: USDA

Detecting and Preventing Disease in Trout

USDA Agricultural Research Service - Fri, 10/03/2014 - 07:14
Detecting and Preventing Disease in Trout / October 3, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Rainbow trout.
ARS scientists are field testing a new disease-resistant rainbow trout. Photo courtesy of U.S. Geological Survey, Bugwood.org.


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Detecting and Preventing Disease in Trout

By Sandra Avant
October 3, 2014

U.S. Department of Agriculture (USDA) scientists are taking their studies to the field to gauge the survival rate of a new line of rainbow trout that is resistant to bacterial cold-water disease.

The disease often kills young, smaller cold-water fish species and impairs growth and yield in larger, older fish. In addition to developing a disease-resistant trout line, researchers at the Agricultural Research Service's (ARS) National Center for Cool and Cold Water Aquaculture (NCCCWA) in Leetown, West Virginia, created a susceptible line and a control line to use in studies.

Molecular biologist Greg Wiens and geneticist Timothy Leeds at NCCCWA recently evaluated the three trout lines in field trials. Partnering with the aquaculture industry and government stakeholders, they measured performance of trout under farm conditions before and after natural exposure to the pathogen Flavobacterium psychrophilum, which causes bacterial cold-water disease. The rate of survival for the disease-resistant line was higher, and fewer disease-resistant fish harbored the pathogen in their internal tissues compared with the control and susceptible fish.

A highly sensitive real-time polymerase chain (PCR) reaction test, developed by Wiens and postdoctoral fellow David Marancik, was used to confirm that the resistant trout line did not harbor any detectable pathogen. The PCR recognizes a unique gene sequence found only in pathogen and accurately measures small amounts of it in fish tissue.

In other studies, scientists identified a genetic link between a physical trait—spleen size—and specific disease resistance in fish. Wiens and research geneticist Yniv Palti found common genetic regions in trout that influence both spleen size and disease resistance, and they are conducting further research to identify the genes that are responsible.

Read more about this research in the October issue of Agricultural Research magazine.

ARS is USDA's chief intramural scientific research agency, and this research supports the USDA priority of promoting international food security.

Categories: USDA

Sniffing Out the Source of Beef Manure Odor

USDA Agricultural Research Service - Thu, 10/02/2014 - 07:16
Detecting and Preventing Disease in Trout / October 3, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Rainbow trout.
ARS scientists are field testing a new disease-resistant rainbow trout. Photo courtesy of U.S. Geological Survey, Bugwood.org.


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Detecting and Preventing Disease in Trout

By Sandra Avant
October 3, 2014

U.S. Department of Agriculture (USDA) scientists are taking their studies to the field to gauge the survival rate of a new line of rainbow trout that is resistant to bacterial cold-water disease.

The disease often kills young, smaller cold-water fish species and impairs growth and yield in larger, older fish. In addition to developing a disease-resistant trout line, researchers at the Agricultural Research Service's (ARS) National Center for Cool and Cold Water Aquaculture (NCCCWA) in Leetown, West Virginia, created a susceptible line and a control line to use in studies.

Molecular biologist Greg Wiens and geneticist Timothy Leeds at NCCCWA recently evaluated the three trout lines in field trials. Partnering with the aquaculture industry and government stakeholders, they measured performance of trout under farm conditions before and after natural exposure to the pathogen Flavobacterium psychrophilum, which causes bacterial cold-water disease. The rate of survival for the disease-resistant line was higher, and fewer disease-resistant fish harbored the pathogen in their internal tissues compared with the control and susceptible fish.

A highly sensitive real-time polymerase chain (PCR) reaction test, developed by Wiens and postdoctoral fellow David Marancik, was used to confirm that the resistant trout line did not harbor any detectable pathogen. The PCR recognizes a unique gene sequence found only in pathogen and accurately measures small amounts of it in fish tissue.

In other studies, scientists identified a genetic link between a physical trait—spleen size—and specific disease resistance in fish. Wiens and research geneticist Yniv Palti found common genetic regions in trout that influence both spleen size and disease resistance, and they are conducting further research to identify the genes that are responsible.

Read more about this research in the October issue of Agricultural Research magazine.

ARS is USDA's chief intramural scientific research agency, and this research supports the USDA priority of promoting international food security.

Categories: USDA

Tool Helps Track Insects Blowing In the Wind

USDA Agricultural Research Service - Mon, 09/29/2014 - 08:44
Tool Helps Track Insects Blowing In the Wind / September 29, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Corn earworm on corn stalk (Helicoverpa zea). Link to photo information
ARS researchers have discovered that weather-reporting Doppler radar can also track corn earworms.


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Tool Helps Track Insects Blowing In the Wind

By Dennis O'Brien
September 29, 2014

Corn earworms, also known as cotton bollworms, migrate at night, making them notoriously hard to track. Farmers worried about controlling infestations have to make educated guesses about the pest's movements, based on reports from other areas and past experience. Guessing wrong can be expensive: The pest costs cotton producers an estimated $200 million a year.

U.S Department of Agriculture (USDA) scientists in College Station, Texas, have shown that signals routinely collected by the National Weather Service's (NWS) Doppler radar network could serve as an early-warning system to track corn earworms and other nighttime traveling pests.

Agricultural Research Service (ARS) meteorologists John Westbrook and Ritchie Eyster at the Southern Plains Agricultural Research Center in College Station focused on the capabilities of what is known as Next Generation Weather Radar, or NEXRAD.

With more than 150 ground-based installations across the United States, NEXRAD monitors weather conditions by sweeping the atmosphere every 5 to 10 minutes and reading the energy reflected by rain, snow and other precipitation. Algorithms normally remove energy reflected by flying insects, but scientists have used NEXRAD and other radar signals to track birds, bats, and insects.

Westbrook and Eyster obtained 15 days of NEXRAD data from the NWS installation at Brownsville, Texas, to see if they could use it to make aerial counts of corn earworm moths and determine their movement patterns during peak migration times from cornfields in the Lower Rio Grande Valley.

The researchers measured radar properties associated with aerial concentrations of moths at heights of up to 3,900 feet, using archived NEXRAD data collected in 1996. They compared it with data from the same time period previously collected by Wayne Wolf, a retired ARS agricultural engineer, with a scanning "X-band" radar system. Unlike NEXRAD, which is constantly operating, the scanning X-band system is specifically designed to track insects, but must be set up and monitored each time it's used. NEXRAD data is publicly available and can be used without any positioning or monitoring cost, so it would be less expensive.

The results showed that NEXRAD was not only capable of tracking insect migration patterns, but also was superior to the X-band system because it offered a larger detection range and could determine the direction and speed of the insects. The results of this work were published in the International Journal of Biometeorology (April 2013).

More work is needed, but recent upgrades should make it easier to use NEXRAD radar to identify potential corn earworm infestations. Also, with refined algorithms, it should be able to track beet armyworms, grasshoppers, and other large-bodied insects.

Read more about this research in the September 2014 issue of Agricultural Research magazine.

Categories: USDA

Using Local Lakes to Safeguard Regional Water Quality

USDA Agricultural Research Service - Fri, 09/26/2014 - 07:31
Using Local Lakes to Safeguard Regional Water Quality / September 26, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 A metal weir constructed in a natural bendway of the Coldwater River. Link to photo information
Shallow oxbow lakes fitted with low dams called weirs to slow water flow can help trap pesticides, nutrients and sediment from field runoff. Click the image for more information about it.


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Using Local Lakes to Safeguard Regional Water Quality

By Ann Perry
September 26, 2014

Isolated lakes in the Mississippi Delta can be transformed into farmer-friendly landscape features that trap agricultural pollutants, according to research at the U.S. Department of Agriculture (USDA). These findings by Agricultural Research Service (ARS) ecologist Richard Lizotte and his colleagues can help producers control the impacts of field runoff on downstream water bodies as far as the Gulf of Mexico. ARS is USDA's chief intramural scientific agency.

Lizotte, who works at the ARS Water Quality and Ecology Research Unit in Oxford, Mississippi, led a series of studies that evaluated how effectively an experimental wetland along Mississippi's Coldwater River trapped common crop pesticides. The study watershed was developed in a small stretch of the river that had been cut off from the main channel. The resulting pool had two distinct sections: One was as deep as a small lake, and the other was a shallow wetland surrounded by natural vegetation.

The team installed small dams called weirs at either end of the wetland. Then they added three pesticides to the wetland at the upstream weir at rates that would simulate typical runoff rates from a 40-acre field.

After the researchers added the pesticide mix to the water, it only took 24 hours for pesticide concentrations near the upstream weir to drop almost 65 percent, while at the downstream weir, only trace amounts of the pesticide were detected. Pesticide concentrations became undetectable at the upstream weir 21 days later.

Lizotte also assessed how well the experimental wetland reduced concentrations of pesticides, nutrients, and sediment from a "catastrophic" runoff event that could result from sudden and severe storms shortly after fertilizers and/or pesticides are applied. He noted that sediment, phosphorus, nitrogen, and pesticide concentrations peaked within three hours after the event as far as 325 yards below the upstream weir.

But within 48 hours, loads of the sediment, nutrients, and pesticides had been reduced by as much as 98 percent. Twenty-eight days later, levels of all the pollutants had returned to—and sometimes even dropped below—pre-event levels.

Lizotte believes his findings show that these types of wetlands could become a very effective and efficient tool for reducing field runoff contaminants.

Results from his research have been published in River Research and Applications, Science of the Total Environment, and Ecohydrology.

Read more about this work in the September 2014 issue of Agricultural Research magazine.

Categories: USDA

Choosing the Right Season for Applying Chicken Litter in the South

USDA Agricultural Research Service - Wed, 09/24/2014 - 07:35
Choosing the Right Season for Applying Chicken Litter in the South / September 24, 2014 / News from the USDA Agricultural Research Service

 Poultry litter being incorporated into the soil during disking of a field.  Link to photo information
ARS research shows that spring is the optimal season for applying poultry litter to corn fields in the South and Southeast and can improve crop yields. Click the image for more information about it.


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Choosing the Right Season for Applying Chicken Litter in the South

By Dennis O'Brien
September 24, 2014

Using poultry litter as fertilizer is a welcome trend in many southern states because that is where most of the U.S. broiler chickens are produced. The litter's nitrogen content helps boost crop yields, and also helps reduce farmers' expenses for commercial fertilizers. But a U.S. Department of Agriculture (USDA) agronomist has found that many farmers in Mississippi may be applying litter at the wrong time of year.

Farmers in Mississippi often apply poultry litter in the fall, months before planting cash crops in the spring, because it's cheaper then and they have more time than in the spring. But Haile Tewolde, an Agricultural Research Service (ARS) agronomist at Mississippi State, Mississippi, has found that spring is the optimal season for applying litter in the South and Southeast. ARS is USDA's chief intramural scientific research agency.

Tewolde and his colleagues applied poultry litter in the spring and fall to test plots of corn planted each April for three years. They applied the litter at two rates—four tons per acre and eight tons per acre—and incorporated it into the soil by "disking," a process that turns the soil and pulverizes it so that the litter blends in with the soil. For comparison, the researchers applied nitrogen fertilizer to other test plots in the spring and fall.

The results showed that over three years, yields were cumulatively higher in plots with litter applied in the spring than in the fall, regardless of the application rate. At the four-ton rate, spring-application yields were 16.7 percent higher, and at the eight-ton rate, they were 12.8 percent higher.

The results also showed that while using litter produced less corn than using fertilizer in the first year, those results were reversed in the second and third years. Higher yields in the second and third years were likely because nitrogen in the litter applied during the first year stayed in the soil and benefited crops in subsequent years.

The results, published in 2013 in the Agronomy Journal, show that if growers stick with litter for more than a year, their yields will improve. Yields also will be enhanced if they apply that litter in the spring.

Categories: USDA

Fungi Eyed to Tackle Weedy Menace of American West

USDA Agricultural Research Service - Mon, 09/22/2014 - 08:40
Fungi Eyed to Tackle Weedy Menace of American West / September 19, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Russian thistle. Link to photo information
ARS researchers have identified two new biological controls for tumbleweed, which is a nasty problem in the American West. Photo courtesy of Forest & Kim Starr. Click the image for a 300 dpi download.


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Fungi Eyed to Tackle Weedy Menace of American West

By Jan Suszkiw
September 22, 2014

Beneficial fungi could become microbial marshals tasked with wrangling a weedy icon of the American West, Salsola tragus—also known as tumbleweed or Russian thistle.

Popularly depicted in movies and television tumbling through dusty towns of the Old West, tumbleweed is in fact one nasty hombre of the western American landscape, elbowing aside crops, clogging irrigation ditches, spreading insect pests, and even posing a driving hazard.

Large-scale infestations, especially on low-value agricultural lands, can make chemical or cultural control too costly or impractical, according to U.S. Department of Agriculture (USDA) plant pathologist Dana Berner. He works at the Agricultural Research Service (ARS) Foreign Disease-Weed Science Research Unit in Frederick, Maryland. ARS is USDA's chief intramural scientific research agency.

In studies at Frederick, Berner and his colleagues are evaluating certain fungi with potential to biologically control tumbleweed, an invasive species that entered the United States in the 1870s as a flax seed contaminant.

Their most promising fungal candidates, Uromyces salsolae and Colletotrichum salsolae, were originally isolated from infected thistle plants in Russia and Hungary and exported to the ARS Frederick lab under permit for quarantine study. In Biosafety Level-3 greenhouse containment, the researchers exposed plant specimens from 64 different species to U. salsolae and 89 species to C. salsolae and gauged the plants' reactions and disease symptoms, if any.

To broaden the scope of their host-range tests—critical to ensuring the fungi won't harm non-target plants or crops once released—the team used an approach called BLUPs, short for "mixed model equations that produce Best Linear Unbiased Predictors." Using a disease ranking system and matrix information, BLUPs predict a plant species' susceptibility based on how genetically similar it is to the targeted weed—Russian thistle, for example.

Based on the information, the researchers have submitted petitions seeking recommendation for release of the two fungi from the Technical Advisory Group for Biological Control Agents of Weeds, which comprises members from federal and state regulatory agencies, as well as from Canada and Mexico.

Read more about this research in the September 2014 issue of Agricultural Research magazine.

Categories: USDA

Compound from Bacteria Could Be Useful Against Pecan Scab

USDA Agricultural Research Service - Wed, 09/17/2014 - 07:37
Compound from Bacteria Could Be Useful Against Pecan Scab / September 17, 2014September 17, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Pecan husks displaying black lesions caused by a fungus are shown beside a photo of pecan nuts.
ARS researchers have identified compounds from extracts of bacteria that live inside beneficial nematodes that can suppress pecan scab (shown on left), a major fungal disease affecting pecan production in the southeastern United States.


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Compound from Bacteria Could Be Useful Against Pecan Scab

By Sharon Durham
September 17, 2014

Bacteria that live inside the guts of tiny nematodes could hold the key to controlling pecan scab, a major fungal disease that affects pecan production in the southeastern United States.

U.S. Department of Agriculture (USDA) scientists discovered nematode-dwelling bacteria that produce chemical compounds that control the fungus Fusicladium effusum, which causes pecan scab.

Agricultural Research Service (ARS) plant pathologist Clive Bock, entomologist David Shapiro-Ilan, chemist Charles Cantrell, and plant pathologist David Wedge examined chemical extracts of the bacteria to identify the major components responsible for suppressing pecan scab. ARS is the USDA’s chief intramural scientific research agency, and this research supports the USDA priority of promoting international food security.

Bock and Shapiro-Ilan work at the ARS Fruit and Tree Nut Research Laboratory in Byron, Georgia. Cantrell and Wedge work at the ARS Natural Products Utilization Research Unit in Oxford, Mississippi.

The bacteria, according to Shapiro-Ilan, live in the guts of beneficial nematodes in the genera Steinernema and Heterorhabditis. The bacteria are critical in helping the beneficial nematodes kill their insect hosts, and can be grown in petri dishes. Extracts of the cultures contain antimicrobial metabolites that are active against a wide range of microbial pathogens of animals and plants, including bacteria and fungi.

The extract found to be most toxic to the pecan scab fungus was purified and found to contain trans-cinnamic acid. Laboratory test results showed that trans-cinnamic acid was toxic to the pecan scab fungus in amounts as low as 148-200 micrograms per milliliter in solid culture and 64 micrograms per milliliter in liquid culture.

Conventional chemical fungicides have been widely used to control pecan scab, but in some growing seasons, more than 10 sprays are required to ensure adequate control of the disease on susceptible pecan cultivars. As a result, F. effusum has now developed resistance to at least two classes of fungicide, according to Bock.

This work was published in the Journal of Pest Science in March 2014.

Read more about this research in the September 2014 issue of Agricultural Research magazine.

Categories: USDA

"2,000 Bull Project" Targets Cattle Traits

USDA Agricultural Research Service - Mon, 09/15/2014 - 08:11
2,000 Bull Project Targets Cattle Traits / September 15, 2014September 15, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Cattle from the germplasm evaluation project at the Roman L. Hruska U.S. Meat Animal Research Center in Nebraska.  Link to photo information
As part of the "2,000 Bull Project," ARS geneticist Warren Snelling has identified genetic markers that make it easier to pinpoint cattle that have the hard-to-measure trait of meat tenderness, enhancing breeding decisions. Click the image for more information about it.


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"2,000 Bull Project" Targets Cattle Traits

By Sandra Avant
September 15, 2014

U.S. Department of Agriculture (USDA) scientists are investigating methods to help beef cattle producers further improve genetic evaluations for routinely measured traits such as growth and calving ease. They are also targeting economically important traits like feed efficiency and disease resistance that are expensive or difficult to measure.

In 2007, scientists started the "2,000 Bull Project" at the Agricultural Research Service (ARS) Roman L. Hruska U.S. Meat Animal Research Center (USMARC) in Clay Center, Nebraska, to study relationships between genomic variation and economically important traits in 16 breeds. ARS is USDA's principal intramural scientific research agency, and this research supports the USDA priority of promoting international food security.

USMARC geneticists Mark Thallman and Larry Kuehn and their colleagues worked with U.S. cattle breed associations to obtain genomic profiles of 2,000 bulls from those 16 breeds to promote the development of genomic predictions. For each breed, the project provided the first substantial set of high-density genotypes, which are being used by breed associations as a starting point to incorporate genomic data into their breed improvement programs.

Growth is a routine and easily measured trait that is related to increased feed consumption, but an animal's feed efficiency-how much feed is required to produce a unit of growth-is more economically important to producers. However, individual feed intake is not practical to measure on large numbers of animals in commercial operations. Instead, a more feasible approach is to use research populations to develop genomic predictions for traits such as individual feed intake, disease resistance and meat tenderness that are expensive or difficult to measure.

At USMARC, thousands of cattle have been evaluated for such traits, and about 15,000 have been genotyped. The researchers' goal is to detect genomic regions that affect these traits to improve the accuracy of genomic tests available to producers. Also, the scientists are sequencing the genomes of bulls that have the most descendants in the USMARC population, which may lead to more accurate predictions across breeds and benefit the industry.

As part of this effort, geneticist Warren Snelling is focusing on identifying DNA sequence variation that affects gene function to help predict important traits consistently across many breeds. Snelling has demonstrated that this technique can be used to identify genetic markers predictive of meat tenderness.

Read more about this research in the September 2014 issue of Agricultural Research magazine.

Categories: USDA

Four Scientists Named to ARS Science Hall of Fame

USDA Agricultural Research Service - Wed, 09/10/2014 - 12:23
Four Scientists Named to Agricultural Research Service Science Hall of Fame / September 10, 2014 / News from the USDA Agricultural Research Service

Perry Cregan
Perry Cregan
300 dpi image.

Jerry Hatfield
Jerry Hatfield
300 dpi image.

Hyun Lillehoj
Hyun Lillehoj
300 dpi image.

Ross Welch
Ross Welch
300 dpi image.

Four Scientists Named to Agricultural Research Service Science Hall of Fame

By Jan Suszkiw
September 10, 2014

WASHINGTON, Sept. 10, 2014—Four scientists have been named to the Agricultural Research Service (ARS) Science Hall of Fame for discoveries in soybean genomics, sustainable farming, poultry disease control and crop micronutrients. ARS is the chief intramural scientific research agency of the U.S. Department of Agriculture (USDA).

Perry B. Cregan, Jerry L. Hatfield, Hyun S. Lillehoj and Ross M. Welch will be honored today in a ceremony at the ARS National Agricultural Library in Beltsville, Md. ARS established the Science Hall of Fame in 1986 to honor senior agency researchers for outstanding, lifelong achievements in agricultural science and technology. Nominees must be retired or eligible to retire to receive the award.

"Our four inductees are being recognized today for exemplary research that has had significant impact on the agricultural sector and scientific community through their innovative approaches to problem solving and dedication to mentoring young scientists," said ARS Administrator Chavonda Jacobs-Young. "They exemplify the values that have made ARS the premier agricultural research organization that it is today."

Cregan, research leader of the ARS Soybean Genomics and Improvement Laboratory in Beltsville, Md., has been the driving force behind the development of new tools to identify, describe and map soybean, wheat and common bean genes for economically important traits, including resistance to pests and diseases, better tolerance to stresses such as drought, increased yield and improved seed quality traits.

Hatfield, director of the ARS National Laboratory for Agriculture and the Environment in Ames, Iowa, has conducted numerous field-scale research projects leading to the development of more efficient farming practices and strategies to prevent or mitigate the environmental impact of nutrient, sediment or chemical losses from crop fields through runoff, erosion or other processes.

Lillehoj, a research molecular biologist at the ARS Animal Biosciences and Biotechnology Laboratory in Beltsville, Md., has conducted basic and applied research that advanced the understanding of immunological responses in poultry to the enteric pathogens Eimeria and Clostridium, which together cost the U.S. poultry industry $5 billion annually in losses. Lillehoj also has developed alternatives to antibiotic approaches—integrating nutrition, health and disease research—to protect commercial chickens from important avian diseases.

Welch, a retired plant physiologist who worked at the ARS Plant, Soil and Nutrition Research Unit in Ithaca, N.Y., conducted pioneering research on the roles of zinc, iron, nickel and other micronutrients in maintaining plant health and productivity. His discoveries illustrated the importance of using plant breeding and fertilization to bolster micronutrient levels in staple food crops, especially in developing countries where health problems associated with malnutrition is a concern.

Categories: USDA

New Lure Target's Almond Enemy No. 1: Navel Orangeworm

USDA Agricultural Research Service - Thu, 08/28/2014 - 12:21
Four Scientists Named to Agricultural Research Service Science Hall of Fame / September 10, 2014 / News from the USDA Agricultural Research Service

Perry Cregan
Perry Cregan
300 dpi image.

Jerry Hatfield
Jerry Hatfield
300 dpi image.

Hyun Lillehoj
Hyun Lillehoj
300 dpi image.

Ross Welch
Ross Welch
300 dpi image.

Four Scientists Named to Agricultural Research Service Science Hall of Fame

By Jan Suszkiw
September 10, 2014

WASHINGTON, Sept. 10, 2014—Four scientists have been named to the Agricultural Research Service (ARS) Science Hall of Fame for discoveries in soybean genomics, sustainable farming, poultry disease control and crop micronutrients. ARS is the chief intramural scientific research agency of the U.S. Department of Agriculture (USDA).

Perry B. Cregan, Jerry L. Hatfield, Hyun S. Lillehoj and Ross M. Welch will be honored today in a ceremony at the ARS National Agricultural Library in Beltsville, Md. ARS established the Science Hall of Fame in 1986 to honor senior agency researchers for outstanding, lifelong achievements in agricultural science and technology. Nominees must be retired or eligible to retire to receive the award.

"Our four inductees are being recognized today for exemplary research that has had significant impact on the agricultural sector and scientific community through their innovative approaches to problem solving and dedication to mentoring young scientists," said ARS Administrator Chavonda Jacobs-Young. "They exemplify the values that have made ARS the premier agricultural research organization that it is today."

Cregan, research leader of the ARS Soybean Genomics and Improvement Laboratory in Beltsville, Md., has been the driving force behind the development of new tools to identify, describe and map soybean, wheat and common bean genes for economically important traits, including resistance to pests and diseases, better tolerance to stresses such as drought, increased yield and improved seed quality traits.

Hatfield, director of the ARS National Laboratory for Agriculture and the Environment in Ames, Iowa, has conducted numerous field-scale research projects leading to the development of more efficient farming practices and strategies to prevent or mitigate the environmental impact of nutrient, sediment or chemical losses from crop fields through runoff, erosion or other processes.

Lillehoj, a research molecular biologist at the ARS Animal Biosciences and Biotechnology Laboratory in Beltsville, Md., has conducted basic and applied research that advanced the understanding of immunological responses in poultry to the enteric pathogens Eimeria and Clostridium, which together cost the U.S. poultry industry $5 billion annually in losses. Lillehoj also has developed alternatives to antibiotic approaches—integrating nutrition, health and disease research—to protect commercial chickens from important avian diseases.

Welch, a retired plant physiologist who worked at the ARS Plant, Soil and Nutrition Research Unit in Ithaca, N.Y., conducted pioneering research on the roles of zinc, iron, nickel and other micronutrients in maintaining plant health and productivity. His discoveries illustrated the importance of using plant breeding and fertilization to bolster micronutrient levels in staple food crops, especially in developing countries where health problems associated with malnutrition is a concern.

Categories: USDA

New Lure Target's Almond Enemy No. 1: Navel Orangeworm

USDA Agricultural Research Service - Thu, 08/28/2014 - 12:21
New Lure Target's Almond Enemy No. 1: Navel Orangeworm / August 28, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Adult navel orangeworm moth (Amyelois transitella) on an almond. Link to photo information
ARS researchers and their colleagues have developed a new lure that is seven times more powerful than the current standard for bringing the navel orangeworm, the number one insect pest of almonds, into monitoring traps. Click the image for more information about it.


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New Lure Target's Almond Enemy No. 1: Navel Orangeworm

By Marcia Wood
August 28, 2014

Almond orchard experiments and laboratory tests led by U.S. Department of Agriculture (USDA) scientists and their colleagues are yielding good news for almond fans and bad news for almond's No. 1 insect enemy, the navel orangeworm. Headed by USDA chemist John J. Beck, the team has developed a promising new combination of all-natural compounds to lure navel orangeworm moths into monitoring traps.

According to Beck, preliminary tests at his Albany, California, laboratory and in two orchards in that state—the nation's leader in almond production—indicate that the experimental lure is at least seven times more powerful than the most commonly used alternative. Beck works at the Western Regional Research Center operated by the Agricultural Research Service (ARS), the chief intramural scientific research agency of USDA.

The new lure's effectiveness is due, at least in part, to its ability to attract both male and female navel orangeworm moths. The conventional lure can't do that.

The monitoring traps in which the new lure might someday be used are typically hung from almond tree branches. Growers and their pest control advisors use the traps to detect incoming navel orangeworm moths and to monitor their numbers, then use that information to determine the best time to apply insecticide. The new lure may provide a more accurate picture of moth numbers within an orchard.

Navel orangeworm larvae that emerge from eggs laid by female moths can damage almonds by feeding on the kernels or by contaminating them with mold-forming Aspergillus flavus or A. parasiticus fungi. The fungi are of concern because they can produce cancer-causing compounds known as aflatoxins. Almond processors spend millions of dollars annually inspecting harvested almonds to keep any nuts that contain unsafe levels of these toxins out of the food supply.

The almond studies help improve food safety and reduce food waste, two USDA top priorities. An article in the August 2014 issue of Agricultural Research magazine has more details about the research.

Beck and Douglas M. Light, Wai S. Gee, and Noreen E. Mahoney, all with ARS at Albany; Daniel D. Cook, with ARS at Logan, Utah; Bradley S. Higbee of Paramount Farming Co., LLC, and other colleagues, conducted the research with funding from ARS, the California Department of Food and Agriculture, the Almond Board of California, the California Pistachio Research Board, and Paramount Farming; and with the assistance of D&D Farms, S&J Ranch, Strain Ranches, Nickels Soil Laboratory, and others.

Categories: USDA

Process Turns Barley into High-protein Fish Food

USDA Agricultural Research Service - Mon, 07/14/2014 - 08:10
Process Turns Barley into High-protein Fish Food / July 14, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Three rainbow trout swimming over rocks. Link to photo information
A patented new process turns barley into a perfect high protein feed for carnivorous fish like salmon and rainbow trout as a plant-based alternative to fishmeal, which is made from small ocean fish. Click the image for more information about it.


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Process Turns Barley into High-protein Fish Food

By Sandra Avant
July 14, 2014

A process that improves the nutritional value of barley for use in fish feed has been developed by scientists at the U.S. Department of Agriculture (USDA) and Montana Microbial Products LLC (MMP) of Missoula, Montana.

Barley typically contains about 10 to12 percent protein, but 40 to 60 percent protein is needed in diets of carnivorous fish like rainbow trout and salmon. The new enzymatic process patented by the Agricultural Research Service (ARS) and MMP concentrates protein by removing the carbohydrates in barley and turning them into an ethanol coproduct, utilizing all the nutrients in the grain.

ARS is USDA's principal intramural scientific research agency, and this research supports the USDA priority of promoting international food security.

The new high-protein product produced by this technology should help fill the gap for more plant-based protein sources as alternatives to fishmeal, which is made from small ocean fish, according to fish physiologist Rick Barrows, with the ARS Small Grains and Potato Germplasm Research Unit in Aberdeen, Idaho. In addition, barley protein concentrate has less variability in composition and is less expensive than most fishmeals.

Barrows, who works in Bozeman, Montana, and his team tested barley protein concentrate in rainbow trout and found digestibility—the percentage of nutrients available to the fish—to be as high as 95 percent. The product also was tested in Atlantic salmon by research leader William Wolters and fish physiologist Gary Burr at the ARS National Cold Water Marine Aquaculture Center in Franklin, Maine.

Atlantic salmon were fed a diet containing either 11 percent or 22 percent barley protein concentrate. The growth of those salmon was not significantly different from salmon fed a standard fishmeal diet. Also, the fish that ate the 22 percent barley protein concentrate diet had significantly greater energy retention compared to fish fed the other diets. Higher energy retention demonstrates that the fish are using the feed more efficiently.

MMP has built a commercial prototype plant in Montana to produce barley protein concentrate for trout feeding trials. The company also plans to build a commercial facility in the near future.

Categories: USDA

Reducing Fertilizer Use with a More Accurate Soil Test

USDA Agricultural Research Service - Thu, 07/10/2014 - 12:03
Reducing Fertilizer Use with a More Accurate Soil Test / July 10, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Hands holding soil. Link to photo information
An ARS soil scientist has developed a more precise test for how much fertilizer a farmer needs to add to a field, reducing costs by about $10 to $15 per acre and the chances there will be excess running off into surface water. Click the image for more information about it.


For further reading

Reducing Fertilizer Use with a More Accurate Soil Test

By Dennis O'Brien
July 10, 2014

Soil tests that determine fertilizer needs measure nitrate in the soil, but they don't sufficiently account for soil microbes, which mineralize organic nitrogen and make more of it available to a crop. As a result, farmers often apply more fertilizer than they need.

Richard Haney, a U.S. Department of Agriculture (USDA) soil scientist in Temple, Texas, has developed a soil test that replicates some of the natural processes that occur in a field and accounts for that microbial activity, along with measuring nitrate, ammonium (NH4), and organic nitrogen.

Haney is with the USDA Agricultural Research Service (ARS) Grassland, Soil and Water Research Laboratory in Temple. ARS is USDA's principal intramural scientific research agency.

The new soil test is known as the Soil Health Tool. It involves drying and rewetting soil to mimic the effects of precipitation. It also uses the same organic acids that plant roots use to acquire nutrients from the soil. The tool measures organic carbon and other nutrients, accounts for the effects of using cover crops and no-till practices, and will work for any crop produced with nitrogen or other types of nutrient fertilizer.

Haney has made it available to commercial and university soil testing laboratories and has worked with farmers to promote it. Growers who use it receive a spreadsheet that shows the amounts of nitrogen, phosphorus, and potassium available to crops. On average, they reduce fertilizer costs by about $10 to $15 per acre. With less fertilizer applied, there is less of it running off into surface water.

Haney and Daren Harmel, an ARS agricultural engineer at the Temple lab, evaluated the tool in fields where they raised wheat, corn, oats, and grain sorghum at nine Texas sites over four years. They applied traditional fertilizer rates; no fertilizer; and the amounts dictated by the Haney soil tests. They planted and harvested on the same dates at each site, and kept track of fertilizer costs and application dates, crop prices, and overall profits.

They found that the tool reduced fertilizer use by 30 to 50 percent and reduced fertilizer costs by up to 39 percent. The enhanced testing methods had little effect on corn production profits, but increased profits by 7 to 18 percent in wheat, oat, and sorghum fields. The results were published in the Open Journal of Soil Science.

Read more about this research in the July 2014 issue of Agricultural Research magazine.

Categories: USDA

Calcium Makes for an Environmentally Friendly Pickle

USDA Agricultural Research Service - Mon, 07/07/2014 - 08:14
Calcium Makes for an Environmentally Friendly Pickle / July 7, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 A cheeseburger on a bun with container of pickle slices. Link to photo information
ARS scientists have developed a way to replace most of the salt in pickle processing with calcium chloride, solving one of the industry's major environmental problems. Click the image for more information about it.


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Calcium Makes for an Environmentally Friendly Pickle

By Kim Kaplan
July 7, 2014

U.S. Department of Agriculture (USDA) scientists have developed a way to help pickle producers replace most of their pickling salt with calcium chloride. This is helping turn an environmental problem into an environmental plus for the pickle industry.

The U.S. pickle industry has been facing growing environmental troubles with disposing of the salty brining solution used to turn cucumbers into pickles. Americans consume nine pounds of pickles per capita each year. Brine disposal was one of the factors that helped push the California olive pickling and processing industry out of that state and overseas in the 1980s.

But microbiologist Ilenys Pérez-Díaz, food technologist Suzanne Johanningsmeier and chemist Roger F. McFeeters (now retired) at the Agricultural Research Service (ARS) Food Science Research Unit in Raleigh, North Carolina, have developed a way to replace most of the sodium chloride in the brine—the pickling liquid—with calcium chloride. Used calcium chloride solution can be a desirable soil amendment rather than a pollutant disposal problem.

ARS is USDA's chief intramural scientific research agency.

Using calcium chloride not only retains desirable firmness in cucumbers as they pickle, but also speeds up the microbiological work of fermentation, according to the researchers.

The technology has already been put to work commercially at the Mt. Olive Pickle Company of Mt. Olive, North Carolina, the largest independent pickle company in the United States, where 66,000 bushels of cucumbers were turned into hamburger dill chips and several flavors of pickle relishes and salad cubes in 2013, using the calcium chloride. While that represented only a small part of the company's annual production, it proved there is a workable answer to at least part of the industry's environmental problem.

The lowered salt is strictly a processing issue and has no impact on the dietary salt content of a pickle.

Now Pérez-Díaz and Johanningsmeier are modifying the calcium chloride technology as a way to preserve gherkin pickles that are imported in acid solution from India. Currently, gherkins undergo a 40-day Atlantic transit packed in vinegar, salt and sulfite; the last ingredient has come to be considered an undesirable ingredient, as some people are sensitive to it. Sulfite would not be needed with new brine formulation.

The United States is a major gherkin market, but India also supplies gherkins to many other countries, so improving the health and environmental circumstances of this product could have worldwide impact.

Read more about this research in the July 2014 issue of Agricultural Research magazine.

Categories: USDA

ARS Scientists Help Improve Soil Carbon Calculations

USDA Agricultural Research Service - Thu, 07/03/2014 - 06:40
ARS Scientists Help Improve Soil Carbon Calculations / July 3, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 A field of crop residues.
ARS scientists have identified factors affecting the measurement of soil carbon sequestration, which is important in assessing how farming practices can reduce carbon emissions. Photo courtesy of NRCS-USDA.


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ARS Scientists Help Improve Soil Carbon Calculations

By Ann Perry
July 3, 2014

A potential source of error in calculating soil carbon budgets has been identified by scientists at the U.S. Department of Agriculture (USDA).

Agricultural Research Service (ARS) soil scientist Hero Gollany has used these findings to refine methods for assessing farming practices that retain carbon in the soil and thus mitigate carbon emissions that contribute to global climate change. ARS is USDA's chief intramural scientific research agency, and these findings support the USDA priority of responding to climate change.

Rates of soil carbon retention, known as sequestration, are often measured and estimated by tracking changes in total soil carbon over time. Carbon from crop residues or other decaying plant material is present in soil samples collected for these sequestration studies. But this "accrued" carbon is not actually sequestered in the soil until after the carbon becomes attached to soil mineral particles, a process that can take several decades.

Until that happens, the accrued carbon from decomposing plant material can readily be lost from the soil, because it is not bound or associated with soil particles. Inadvertently adding the accrued carbon to measurements of sequestered carbon results in overestimates of how agronomic practices affect sequestration levels.

Gollany and Washington State University soil microbiologist Ann-Marie Fortuna used data from another soil carbon field study to see how levels of a specific type of carbon called "light-fraction" carbon affected measurements. Using this method, the scientists determined that carbon sequestration levels measured in the study included carbon from fine crop residue materials that passed through sieves during sample processing—carbon that had accrued in the soil, but was not yet sequestered via decomposition.

This accrued carbon ranged from 13 percent to 19 percent of the total soil carbon in the samples. This, in turn, skewed attempts to use carbon data from the samples to model soil carbon sequestration levels.

Gollany, who works at the ARS Soil Conservation Research Unit in Pendleton, Oregon, published her findings in 2013 in the Soil Science Society of America Journal.

Read more about this work in the July 2014 issue of Agricultural Research magazine.

Categories: USDA

Orange-fleshed Honeydew: Ripe for Beta-carotene Analysis

USDA Agricultural Research Service - Tue, 07/01/2014 - 06:54
Orange-fleshed Honeydew: Ripe for Beta-carotene Analysis / July 1, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Orange-fleshed honeydew melon. Link to photo information
Orange-fleshed honeydew melon and cantaloupe are both comparable sources of dietary provitamin A, on par with carrots, which are known to be a major source of provitamin A. Click the image for more information about it.


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Orange-fleshed Honeydew: Ripe for Beta-carotene Analysis

By Rosalie Marion Bliss
July 1, 2014

Orange-fleshed honeydew melon is a cross between cantaloupe and green-fleshed honeydew. Orange-fleshed honeydew melon is sweeter and stores longer than the typical cantaloupe. To learn more about the melons, U.S. Department of Agriculture (USDA) plant physiologist Gene Lester and his colleagues measured the beta-carotene concentrations in orange-fleshed honeydew and cantaloupe melons grown under the same greenhouse conditions.

Carotenoids such as beta-carotene are also known as provitamin A. Beta-carotene is the most potent precursor of vitamin A for humans, which means the body breaks down beta-carotene into vitamin A.

Lester is with the USDA Agricultural Research Service (ARS) Office of National Programs in Beltsville, Maryland. ARS is USDA's principal intramural scientific research agency.

The team found that orange-fleshed honeydew had significantly higher beta-carotene concentrations than cantaloupe, but the two melon types had similar beta-carotene bioaccessibility. Before the human body can make use of a fruit's nutrients, the nutrients must first be released from the fruit tissues, becoming "bioaccessible," and then the nutrients can be absorbed into the circulation, becoming "bioavailable." This means that both melons appear to be comparable sources of dietary provitamin A for humans, on par with carrots, which are known to be a major source of provitamin A.

When testing orange-fleshed melons, the team also noticed indications of compounds not seen before, so they used more sophisticated instrumentation to show that these compounds were apocarotenoids. This is significant because apocarotenoids are metabolized directly into vitamin A. Previously, the researchers did not know apocarotenoids were in orange-fleshed melons.

Lester's team detected and measured levels of the apocarotenoids beta-apo-13-carotenone, beta-apo-14-carotenal, beta-apo-12-carotenal, beta-apo-10-carotenal, and beta-apo-8-carotenal in the orange-fleshed melons.

Read more about this published research in the July 2014 issue of Agricultural Research magazine.

Funding support for the study was provided by USDA and by grants from the National Institutes of Health.

Categories: USDA

Nanoparticle-based Coating Helps Stop Water from Beading

USDA Agricultural Research Service - Mon, 06/30/2014 - 07:13
Nanoparticle-based Coating Helps Stop Water from Beading / June 30, 2014 / News from the USDA Agricultural Research Service
Read the magazine story to find out more.

 Only the right half of this plastic container has been treated with a new coating that prevents water from beading. Link to photo information
ARS scientists have developed a new coating, beginning with either a bovine protein or a wheat protein as a building block, that keeps water from beading up on windows. Click the image for more information about it.


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Nanoparticle-based Coating Helps Stop Water from Beading

By Marcia Wood
June 30, 2014

Rainwater pounding on the glass windows of an office building or a home is less likely to bead up and reduce visibility if the windows are treated with a new, transparent coating from U.S. Department of Agriculture (USDA) chemist Sanghoon Kim and his colleagues.

Besides its potential use on windows, the coating might also be applied to solar panels to help keep dirt from interfering with their performance, Kim notes.

What's more, Kim and his colleagues have observed that the coating works well on other materials, including Plexiglas and metals such as stainless steel.

Kim, along with research chemist Atanu Biswas and physical scientist Kervin Evans—all with the USDA Agricultural Research Service (ARS) National Center for Agricultural Utilization Research in Peoria, Illinois—created the coating's nanoparticles by using only a few off-the-shelf laboratory chemicals, including a protein from agriculture.

From start to finish, production of the nanoparticles takes less than an hour, involves simple procedures with inexpensive chemicals, and doesn't require specialized equipment or costly heating.

In a proof-of-concept experiment, the researchers used bovine serum albumin, which is a cattle industry byproduct, as the protein, and ethyl cyanoacrylate, a major component of "super glue," as the starting material that is key to creating the nanoparticles.

Applying the coating is quick and easy. All that's needed is to spray it onto clean glass or other recommended surfaces, then rinse with water.

In a follow-up study, Kim and his colleague Yeon Seok Kim of the National Institute of Standards and Technology, used gliadin, a protein from wheat, to demonstrate that their process for making the coating is applicable to both plant- and animal-derived proteins.

Peer-reviewed scientific articles published this year in the Journal of Nanoparticle Research and in 2013 in Colloids and Surfaces B: Biointerfaces have details about the work.

Informal cost estimates suggest that the new coating, made with either a plant or an animal protein, could be produced at the same or less cost than coatings already on the market.

The Peoria coating is rain-ready in about a minute, a feature that apparently makes it unique. ARS is seeking a patent for the research; the scientists are looking for industry partners to commercialize it.

Read more in the May/June 2014 issue of Agricultural Research magazine.

ARS is the USDA's chief intramural scientific research agency.

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